J4_5JUU_004

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JUU_004 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1957

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_12410.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

5JUU|1|B|C|185
5JUU|1|B|U|186
5JUU|1|B|A|187
5JUU|1|B|U|188
5JUU|1|B|G|189
*
5JUU|1|B|C|205
5JUU|1|B|G|206
5JUU|1|B|U|207
5JUU|1|B|C|208
*
5JUU|1|B|G|212
5JUU|1|B|A|213
5JUU|1|B|G|214
*
5JUU|1|B|C|226
5JUU|1|B|G|227
5JUU|1|B|U|228
5JUU|1|B|G|229
5JUU|1|B|U|230
5JUU|1|B|G|231

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain C

5.8S ribosomal RNA; 5.8S rRNA

Chain DA

uL24 (yeast L26)

Chain H

uL4 (yeast L4)