J4_5JVH_002

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

CGAUAAA*UC*GCGC*GG

Length

15 nucleotides

Bulged bases

5JVH|1|X|G|1284, 5JVH|1|X|A|1285, 5JVH|1|X|U|1286, 5JVH|1|X|A|1287, 5JVH|1|X|C|1663, 5JVH|1|X|G|1664

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JVH_002 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.0767

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.6

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

5JVH|1|X|C|1283
5JVH|1|X|G|1284
5JVH|1|X|A|1285
5JVH|1|X|U|1286
5JVH|1|X|A|1287
5JVH|1|X|A|1288
5JVH|1|X|A|1289
*
5JVH|1|X|U|1307
5JVH|1|X|C|1308
*
5JVH|1|X|G|1662
5JVH|1|X|C|1663
5JVH|1|X|G|1664
5JVH|1|X|C|1665
*
5JVH|1|X|G|1992
5JVH|1|X|G|1993

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L17

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32