J4_5JVH_006

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GACUG*CACAG*UGAC*GUAAC

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JVH_006 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.0641

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5JVH|1|X|G|1763
5JVH|1|X|A|1764
5JVH|1|X|C|1765
5JVH|1|X|U|1766
5JVH|1|X|G|1767
*
5JVH|1|X|C|1779
5JVH|1|X|A|1780
5JVH|1|X|C|1781
5JVH|1|X|A|1782
5JVH|1|X|G|1783
*
5JVH|1|X|U|1819
5JVH|1|X|G|1820
5JVH|1|X|A|1821
5JVH|1|X|C|1822
*
5JVH|1|X|G|1958
5JVH|1|X|U|1959
5JVH|1|X|A|1960
5JVH|1|X|A|1961
5JVH|1|X|C|1962

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2