J4_5JVH_008

3D structure

PDB id

5JVH (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure large ribosomal subunit (50S) of Deinococcus radiodurans in complex with evernimicin

Experimental method

X-RAY DIFFRACTION

Resolution

3.58 Å

Loop

Sequence

GAGU*AAC*GGAACG*CAGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5JVH_008 not in the Motif Atlas

Homologous match to J4_7A0S_010

Geometric discrepancy: 0.0665

The information below is about J4_7A0S_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_54165.1

Basepair signature

cWW-F-F-F-cWW-cWW-cWW-cWW-cWW-F-F

Number of instances in this motif group

1

Unit IDs

5JVH|1|X|G|2622
5JVH|1|X|A|2623
5JVH|1|X|G|2624
5JVH|1|X|U|2625
*
5JVH|1|X|A|2653
5JVH|1|X|A|2654
5JVH|1|X|C|2655
*
5JVH|1|X|G|2711
5JVH|1|X|G|2712
5JVH|1|X|A|2713
5JVH|1|X|A|2714
5JVH|1|X|C|2715
5JVH|1|X|G|2716
*
5JVH|1|X|C|2748
5JVH|1|X|A|2749
5JVH|1|X|G|2750
5JVH|1|X|C|2751

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13

Chain H

50S ribosomal protein L14