Loop J4_5K0Y

3D structure

PDB id: 5K0Y (explore in PDB, NAKB, or RNA 3D Hub)
Description: m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face
Experimental method: ELECTRON MICROSCOPY
Resolution: 5.8 Å

Loop

Sequence: AUCUUGAGGGCCCGCCCCUCGG*CCGAAGCGUU*AUGGAAUAG*CAUGAU
Length: 47 nucleotides
Bulged bases: 5K0Y|1|A|C|677, 5K0Y|1|A|U|678, 5K0Y|1|A|U|745, 5K0Y|1|A|G|792, 5K0Y|1|A|C|793, 5K0Y|1|A|G|794, 5K0Y|1|A|U|867, 5K0Y|1|A|A|909
QA status: Unknown status

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

5K0Y|1|A|A|675
5K0Y|1|A|U|676
5K0Y|1|A|C|677
5K0Y|1|A|U|678
5K0Y|1|A|U|679
5K0Y|1|A|G|683
5K0Y|1|A|A|684
5K0Y|1|A|G|685
5K0Y|1|A|G|686
5K0Y|1|A|G|687
5K0Y|1|A|C|730
5K0Y|1|A|C|731
5K0Y|1|A|C|732
5K0Y|1|A|G|733
5K0Y|1|A|C|734
5K0Y|1|A|C|735
5K0Y|1|A|C|736
5K0Y|1|A|C|744
5K0Y|1|A|U|745
5K0Y|1|A|C|746
5K0Y|1|A|G|747
5K0Y|1|A|G|748
*
5K0Y|1|A|C|787
5K0Y|1|A|C|788
5K0Y|1|A|G|789
5K0Y|1|A|A|790
5K0Y|1|A|A|791
5K0Y|1|A|G|792
5K0Y|1|A|C|793
5K0Y|1|A|G|794
5K0Y|1|A|U|795
5K0Y|1|A|U|796
*
5K0Y|1|A|A|861
5K0Y|1|A|U|862
5K0Y|1|A|G|863
5K0Y|1|A|G|864
5K0Y|1|A|A|865
5K0Y|1|A|A|866
5K0Y|1|A|U|867
5K0Y|1|A|A|868
5K0Y|1|A|G|869
*
5K0Y|1|A|C|908
5K0Y|1|A|A|909
5K0Y|1|A|U|910
5K0Y|1|A|G|911
5K0Y|1|A|A|912
5K0Y|1|A|U|913

Current chains

Chain A: 18S ribosomal RNA

Nearby chains

Chain G: ribosomal protein uS17
Chain I: 40S ribosomal protein S4
Chain X: ribosomal protein eS7
Chain Z: ribosomal protein uS15
Chain a: ribosomal protein uS8

J4_5K0Y_003