J4_5K0Y_004

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUGG*UGCUGG*CCAGAGGUCG*CC

Length

22 nucleotides

Bulged bases

5K0Y|1|N|U|8, 5K0Y|1|N|U|46, 5K0Y|1|N|C|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5K0Y|1|N|G|7
5K0Y|1|N|U|8
5K0Y|1|N|G|9
5K0Y|1|N|G|10
*
5K0Y|1|N|U|24
5K0Y|1|N|G|25
5K0Y|1|N|C|26
5K0Y|1|N|U|27
5K0Y|1|N|G|28
5K0Y|1|N|G|29
*
5K0Y|1|N|C|39
5K0Y|1|N|C|40
5K0Y|1|N|A|41
5K0Y|1|N|G|42
5K0Y|1|N|A|43
5K0Y|1|N|G|44
5K0Y|1|N|G|45
5K0Y|1|N|U|46
5K0Y|1|N|C|47
5K0Y|1|N|G|48
*
5K0Y|1|N|C|64
5K0Y|1|N|C|65

Current chains

Chain N

tRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain P

Eukaryotic translation initiation factor 2 subunit 1