J4_5K0Y_005

3D structure

PDB id

5K0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

m48S late-stage initiation complex, purified from rabbit reticulocytes lysates, displaying eIF2 ternary complex and eIF3 i and g subunits relocated to the intersubunit face

Experimental method

ELECTRON MICROSCOPY

Resolution

5.8 Å

Loop

Sequence

GUGG*UGC*GAGGUCG*CC

Length

16 nucleotides

Bulged bases

5K0Y|1|N|U|8, 5K0Y|1|N|U|46, 5K0Y|1|N|C|47

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5K0Y_005 not in the Motif Atlas

Homologous match to J4_8VU0_001

Geometric discrepancy: 0.2415

The information below is about J4_8VU0_001

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_95067.1

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

48

Unit IDs

5K0Y|1|N|G|7
5K0Y|1|N|U|8
5K0Y|1|N|G|9
5K0Y|1|N|G|10
*
5K0Y|1|N|U|24
5K0Y|1|N|G|25
5K0Y|1|N|C|26
*
5K0Y|1|N|G|42
5K0Y|1|N|A|43
5K0Y|1|N|G|44
5K0Y|1|N|G|45
5K0Y|1|N|U|46
5K0Y|1|N|C|47
5K0Y|1|N|G|48
*
5K0Y|1|N|C|64
5K0Y|1|N|C|65

Current chains

Chain N

tRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain P

Eukaryotic translation initiation factor 2 subunit 1