J4_5KCR_002

3D structure

PDB id

5KCR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCR_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.0364

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

5KCR|1|1A|G|297
5KCR|1|1A|G|298
5KCR|1|1A|A|299
5KCR|1|1A|A|300
5KCR|1|1A|G|301
*
5KCR|1|1A|C|316
5KCR|1|1A|G|317
5KCR|1|1A|C|318
5KCR|1|1A|G|319
*
5KCR|1|1A|C|323
5KCR|1|1A|A|324
5KCR|1|1A|G|325
*
5KCR|1|1A|C|337
5KCR|1|1A|G|338
5KCR|1|1A|U|339
5KCR|1|1A|A|340
5KCR|1|1A|C|341

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1F

50S ribosomal protein L4

Chain 1Y

50S ribosomal protein L24