J4_5KCR_014
3D structure
- PDB id
- 5KCR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Avilamycin C, mRNA and P-site tRNA at 3.6A resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGUAAAGCG*CGAAAG*CCGUAAACGAUG*CCG
- Length
- 30 nucleotides
- Bulged bases
- 5KCR|1|1a|A|572, 5KCR|1|1a|C|576, 5KCR|1|1a|A|815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5KCR|1|1a|C|569
5KCR|1|1a|G|570
5KCR|1|1a|U|571
5KCR|1|1a|A|572
5KCR|1|1a|A|573
5KCR|1|1a|A|574
5KCR|1|1a|G|575
5KCR|1|1a|C|576
5KCR|1|1a|G|577
*
5KCR|1|1a|C|764
5KCR|1|1a|G|765
5KCR|1|1a|A|766
5KCR|1|1a|A|767
5KCR|1|1a|A|768
5KCR|1|1a|G|769
*
5KCR|1|1a|C|810
5KCR|1|1a|C|811
5KCR|1|1a|G|812
5KCR|1|1a|U|813
5KCR|1|1a|A|814
5KCR|1|1a|A|815
5KCR|1|1a|A|816
5KCR|1|1a|C|817
5KCR|1|1a|G|818
5KCR|1|1a|A|819
5KCR|1|1a|U|820
5KCR|1|1a|G|821
*
5KCR|1|1a|C|879
5KCR|1|1a|C|880
5KCR|1|1a|G|881
Current chains
- Chain 1a
- 16S Ribosomal RNA
Nearby chains
- Chain 1A
- Large subunit ribosomal RNA; LSU rRNA
- Chain 1h
- 30S ribosomal protein S8
- Chain 1k
- 30S ribosomal protein S11
- Chain 1l
- 30S ribosomal protein S12
- Chain 1o
- 30S ribosomal protein S15
- Chain 1q
- 30S ribosomal protein S17
- Chain 1u
- 30S ribosomal protein S21
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