J4_5KCS_001

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5KCS|1|1A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCS_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1766

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5KCS|1|1A|C|268
5KCS|1|1A|C|269
*
5KCS|1|1A|G|370
5KCS|1|1A|A|371
5KCS|1|1A|G|372
5KCS|1|1A|U|373
5KCS|1|1A|A|374
5KCS|1|1A|G|375
*
5KCS|1|1A|U|399
5KCS|1|1A|G|400
5KCS|1|1A|A|401
5KCS|1|1A|A|402
5KCS|1|1A|U|403
5KCS|1|1A|A|404
5KCS|1|1A|U|405
5KCS|1|1A|G|406
*
5KCS|1|1A|C|421
5KCS|1|1A|A|422
5KCS|1|1A|A|423
5KCS|1|1A|G|424

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 11

50S ribosomal protein L28

Chain 1I

50S ribosomal protein L9