J4_5KCS_011

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5KCS|1|1a|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCS_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.314

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5KCS|1|1a|G|115
5KCS|1|1a|A|116
5KCS|1|1a|G|117
5KCS|1|1a|U|118
5KCS|1|1a|A|119
5KCS|1|1a|A|120
5KCS|1|1a|U|121
5KCS|1|1a|G|122
*
5KCS|1|1a|U|239
5KCS|1|1a|G|240
*
5KCS|1|1a|C|286
5KCS|1|1a|U|287
5KCS|1|1a|A|288
5KCS|1|1a|G|289
*
5KCS|1|1a|C|311
5KCS|1|1a|C|312

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16

Chain 1q

30S ribosomal protein S17