J4_5KCS_012

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5KCS|1|1a|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KCS_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1887

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KCS|1|1a|G|142
5KCS|1|1a|A|143
5KCS|1|1a|G|144
*
5KCS|1|1a|C|178
5KCS|1|1a|A|179
5KCS|1|1a|U|180
5KCS|1|1a|A|181
5KCS|1|1a|A|182
5KCS|1|1a|C|183
5KCS|1|1a|G|184
*
5KCS|1|1a|C|193
5KCS|1|1a|C|194
5KCS|1|1a|A|195
5KCS|1|1a|A|196
5KCS|1|1a|A|197
5KCS|1|1a|G|198
*
5KCS|1|1a|U|219
5KCS|1|1a|G|220
5KCS|1|1a|C|221

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1t

30S ribosomal protein S20