J4_5KPS_010

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPS_010 not in the Motif Atlas

Homologous match to J4_9DFE_007

Geometric discrepancy: 0.0941

The information below is about J4_9DFE_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

5KPS|1|28|A|1772
5KPS|1|28|A|1773
5KPS|1|28|C|1774
5KPS|1|28|U|1775
5KPS|1|28|G|1776
*
5KPS|1|28|C|1788
5KPS|1|28|A|1789
5KPS|1|28|C|1790
5KPS|1|28|A|1791
5KPS|1|28|G|1792
*
5KPS|1|28|U|1827
5KPS|1|28|G|1828
5KPS|1|28|A|1829
5KPS|1|28|C|1830
*
5KPS|1|28|G|1975
5KPS|1|28|U|1976
5KPS|1|28|A|1977
5KPS|1|28|A|1978
5KPS|1|28|U|1979

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 27

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2