J4_5KPS_011

3D structure

PDB id

5KPS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

5KPS|1|28|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPS_011 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1167

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_93343.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

5KPS|1|28|C|1833
5KPS|1|28|U|1834
5KPS|1|28|G|1835
*
5KPS|1|28|C|1905
5KPS|1|28|G|1906
*
5KPS|1|28|C|1924
5KPS|1|28|C|1925
5KPS|1|28|U|1926
5KPS|1|28|A|1927
5KPS|1|28|A|1928
5KPS|1|28|G|1929
5KPS|1|28|G|1930
5KPS|1|28|U|1931
5KPS|1|28|A|1932
5KPS|1|28|G|1933
*
5KPS|1|28|C|1967
5KPS|1|28|G|1968
5KPS|1|28|A|1969
5KPS|1|28|A|1970
5KPS|1|28|U|1971
5KPS|1|28|G|1972

Current chains

Chain 28

23S ribosomal RNA

Nearby chains

Chain 27

Small subunit ribosomal RNA; SSU rRNA

Chain 31

Transfer RNA; tRNA

Chain B

50S ribosomal protein L2