J4_5KPS_014
3D structure
- PDB id
- 5KPS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in absence of A/R tRNA (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 5KPS|1|31|U|8, 5KPS|1|31|U|47, 5KPS|1|31|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5KPS_014 not in the Motif Atlas
- Homologous match to J4_6UFM_001
- Geometric discrepancy: 0.2088
- The information below is about J4_6UFM_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
5KPS|1|31|G|7
5KPS|1|31|U|8
5KPS|1|31|G|9
5KPS|1|31|G|10
*
5KPS|1|31|C|25
5KPS|1|31|G|26
5KPS|1|31|U|27
*
5KPS|1|31|A|43
5KPS|1|31|A|44
5KPS|1|31|G|45
5KPS|1|31|G|46
5KPS|1|31|U|47
5KPS|1|31|C|48
5KPS|1|31|G|49
*
5KPS|1|31|C|65
5KPS|1|31|C|66
Current chains
- Chain 31
- P site tRNAfmet
Nearby chains
- Chain 18
- 30S ribosomal protein S13
- Chain 27
- Small subunit ribosomal RNA; SSU rRNA
- Chain 28
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- 50S ribosomal protein L16
Coloring options: