J4_5KPV_001

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

5KPV|1|26|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPV_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2454

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5KPV|1|26|G|115
5KPV|1|26|A|116
5KPV|1|26|G|117
5KPV|1|26|U|118
5KPV|1|26|A|119
5KPV|1|26|A|120
5KPV|1|26|U|121
5KPV|1|26|G|122
*
5KPV|1|26|U|239
5KPV|1|26|G|240
*
5KPV|1|26|C|286
5KPV|1|26|U|287
5KPV|1|26|A|288
5KPV|1|26|G|289
*
5KPV|1|26|C|311
5KPV|1|26|C|312

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16

Chain 21

30S ribosomal protein S17