J4_5KPV_002

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5KPV|1|26|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPV_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.158

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KPV|1|26|G|142
5KPV|1|26|A|143
5KPV|1|26|G|144
*
5KPV|1|26|C|178
5KPV|1|26|A|179
5KPV|1|26|U|180
5KPV|1|26|A|181
5KPV|1|26|A|182
5KPV|1|26|C|183
5KPV|1|26|G|184
*
5KPV|1|26|C|193
5KPV|1|26|C|194
5KPV|1|26|A|195
5KPV|1|26|A|196
5KPV|1|26|A|197
5KPV|1|26|G|198
*
5KPV|1|26|U|219
5KPV|1|26|G|220
5KPV|1|26|C|221

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 24

30S ribosomal protein S20