J4_5KPV_004

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5KPV|1|27|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPV_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1445

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5KPV|1|27|C|268
5KPV|1|27|C|269
*
5KPV|1|27|G|370
5KPV|1|27|A|371
5KPV|1|27|G|372
5KPV|1|27|U|373
5KPV|1|27|A|374
5KPV|1|27|G|375
*
5KPV|1|27|U|399
5KPV|1|27|G|400
5KPV|1|27|A|401
5KPV|1|27|A|402
5KPV|1|27|U|403
5KPV|1|27|A|404
5KPV|1|27|U|405
5KPV|1|27|G|406
*
5KPV|1|27|C|421
5KPV|1|27|A|422
5KPV|1|27|A|423
5KPV|1|27|G|424

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain W

50S ribosomal protein L28