J4_5KPW_002

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5KPW|1|26|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPW_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1602

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KPW|1|26|G|142
5KPW|1|26|A|143
5KPW|1|26|G|144
*
5KPW|1|26|C|178
5KPW|1|26|A|179
5KPW|1|26|U|180
5KPW|1|26|A|181
5KPW|1|26|A|182
5KPW|1|26|C|183
5KPW|1|26|G|184
*
5KPW|1|26|C|193
5KPW|1|26|C|194
5KPW|1|26|A|195
5KPW|1|26|A|196
5KPW|1|26|A|197
5KPW|1|26|G|198
*
5KPW|1|26|U|219
5KPW|1|26|G|220
5KPW|1|26|C|221

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 24

30S ribosomal protein S20