J4_5KPW_004

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5KPW|1|27|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPW_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1379

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5KPW|1|27|C|268
5KPW|1|27|C|269
*
5KPW|1|27|G|370
5KPW|1|27|A|371
5KPW|1|27|G|372
5KPW|1|27|U|373
5KPW|1|27|A|374
5KPW|1|27|G|375
*
5KPW|1|27|U|399
5KPW|1|27|G|400
5KPW|1|27|A|401
5KPW|1|27|A|402
5KPW|1|27|U|403
5KPW|1|27|A|404
5KPW|1|27|U|405
5KPW|1|27|G|406
*
5KPW|1|27|C|421
5KPW|1|27|A|422
5KPW|1|27|A|423
5KPW|1|27|G|424

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain W

50S ribosomal protein L28