J4_5KPX_002

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5KPX|1|26|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPX_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1711

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5KPX|1|26|G|142
5KPX|1|26|A|143
5KPX|1|26|G|144
*
5KPX|1|26|C|178
5KPX|1|26|A|179
5KPX|1|26|U|180
5KPX|1|26|A|181
5KPX|1|26|A|182
5KPX|1|26|C|183
5KPX|1|26|G|184
*
5KPX|1|26|C|193
5KPX|1|26|C|194
5KPX|1|26|A|195
5KPX|1|26|A|196
5KPX|1|26|A|197
5KPX|1|26|G|198
*
5KPX|1|26|U|219
5KPX|1|26|G|220
5KPX|1|26|C|221

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 24

30S ribosomal protein S20