J4_5KPX_004

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5KPX|1|27|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPX_004 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.146

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5KPX|1|27|C|268
5KPX|1|27|C|269
*
5KPX|1|27|G|370
5KPX|1|27|A|371
5KPX|1|27|G|372
5KPX|1|27|U|373
5KPX|1|27|A|374
5KPX|1|27|G|375
*
5KPX|1|27|U|399
5KPX|1|27|G|400
5KPX|1|27|A|401
5KPX|1|27|A|402
5KPX|1|27|U|403
5KPX|1|27|A|404
5KPX|1|27|U|405
5KPX|1|27|G|406
*
5KPX|1|27|C|421
5KPX|1|27|A|422
5KPX|1|27|A|423
5KPX|1|27|G|424

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L9

Chain W

50S ribosomal protein L28