J4_5KPX_007

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

5KPX|1|27|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5KPX_007 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0959

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5KPX|1|27|U|1313
5KPX|1|27|C|1314
*
5KPX|1|27|G|1338
5KPX|1|27|G|1339
5KPX|1|27|U|1340
5KPX|1|27|G|1341
5KPX|1|27|A|1342
5KPX|1|27|G|1343
*
5KPX|1|27|C|1404
5KPX|1|27|U|1405
*
5KPX|1|27|A|1597
5KPX|1|27|A|1598
5KPX|1|27|U|1599
5KPX|1|27|C|1600
5KPX|1|27|G|1601
5KPX|1|27|U|1602
5KPX|1|27|A|1603

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L34

Chain S

50S ribosomal protein L23