J4_5KPX_013
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 5KPX|1|30|U|8, 5KPX|1|30|U|47, 5KPX|1|30|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5KPX_013 not in the Motif Atlas
- Homologous match to J4_4WT8_034
- Geometric discrepancy: 0.2997
- The information below is about J4_4WT8_034
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
5KPX|1|30|A|7
5KPX|1|30|U|8
5KPX|1|30|A|9
5KPX|1|30|G|10
*
5KPX|1|30|C|25
5KPX|1|30|A|26
5KPX|1|30|G|27
*
5KPX|1|30|C|43
5KPX|1|30|G|44
5KPX|1|30|U|45
5KPX|1|30|G|46
5KPX|1|30|U|47
5KPX|1|30|C|48
5KPX|1|30|C|49
*
5KPX|1|30|G|65
5KPX|1|30|U|66
Current chains
- Chain 30
- A-site tRNAPhe
Nearby chains
- Chain 16
- 30S ribosomal protein S12
- Chain 26
- Small subunit ribosomal RNA; SSU rRNA
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
- Chain 33
- GTP pyrophosphokinase
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