J4_5L3P_004

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

5L3P|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5L3P_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1137

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5L3P|1|A|G|1310
5L3P|1|A|G|1311
5L3P|1|A|U|1312
5L3P|1|A|U|1313
5L3P|1|A|C|1314
*
5L3P|1|A|G|1338
5L3P|1|A|G|1339
5L3P|1|A|U|1340
5L3P|1|A|G|1341
5L3P|1|A|A|1342
5L3P|1|A|G|1343
*
5L3P|1|A|C|1404
5L3P|1|A|U|1405
*
5L3P|1|A|A|1597
5L3P|1|A|A|1598
5L3P|1|A|U|1599
5L3P|1|A|C|1600
5L3P|1|A|G|1601
5L3P|1|A|U|1602
5L3P|1|A|A|1603
5L3P|1|A|C|1604

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain X

50S ribosomal protein L23