J4_5L3P_009

3D structure

PDB id

5L3P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGAAG*UUGAC*GGUG*CAGG

Length

18 nucleotides

Bulged bases

5L3P|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5L3P|1|A|C|2285
5L3P|1|A|G|2286
5L3P|1|A|A|2287
5L3P|1|A|A|2288
5L3P|1|A|G|2289
*
5L3P|1|A|U|2343
5L3P|1|A|U|2344
5L3P|1|A|G|2345
5L3P|1|A|A|2346
5L3P|1|A|C|2347
*
5L3P|1|A|G|2370
5L3P|1|A|G|2371
5L3P|1|A|U|2372
5L3P|1|A|G|2373
*
5L3P|1|A|C|2380
5L3P|1|A|A|2381
5L3P|1|A|G|2382
5L3P|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L27

Chain 6

50S ribosomal protein L33

Chain 8

50S ribosomal protein L35

Chain S

50S ribosomal protein L18