J4_5L3P_015
3D structure
- PDB id
- 5L3P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of stringent response factor RelA bound to ErmCL-stalled ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AUAG*CGCA*UGAG(7MG)UCG*CU
- Length
- 18 nucleotides
- Bulged bases
- 5L3P|1|y|U|8, 5L3P|1|y|U|47, 5L3P|1|y|C|48
- QA status
- Modified nucleotides: 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5L3P_015 not in the Motif Atlas
- Homologous match to J4_4RDX_001
- Geometric discrepancy: 0.4757
- The information below is about J4_4RDX_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5L3P|1|y|A|7
5L3P|1|y|U|8
5L3P|1|y|A|9
5L3P|1|y|G|10
*
5L3P|1|y|C|25
5L3P|1|y|G|26
5L3P|1|y|C|27
5L3P|1|y|A|28
*
5L3P|1|y|U|42
5L3P|1|y|G|43
5L3P|1|y|A|44
5L3P|1|y|G|45
5L3P|1|y|7MG|46
5L3P|1|y|U|47
5L3P|1|y|C|48
5L3P|1|y|G|49
*
5L3P|1|y|C|65
5L3P|1|y|U|66
Current chains
- Chain y
- deacylated A/R-tRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
- Chain l
- 30S ribosomal protein S12
- Chain z
- GTP pyrophosphokinase,GTP pyrophosphokinase,GTP pyrophosphokinase
Coloring options: