J4_5LI0_001

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

5LI0|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LI0_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1478

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

5LI0|1|A|C|271
5LI0|1|A|C|272
*
5LI0|1|A|G|416
5LI0|1|A|A|417
5LI0|1|A|G|418
5LI0|1|A|U|419
5LI0|1|A|A|420
5LI0|1|A|C|421
*
5LI0|1|A|G|445
5LI0|1|A|G|446
5LI0|1|A|A|447
5LI0|1|A|A|448
5LI0|1|A|U|449
5LI0|1|A|C|450
5LI0|1|A|U|451
5LI0|1|A|G|452
*
5LI0|1|A|U|467
5LI0|1|A|A|468
5LI0|1|A|A|469
5LI0|1|A|G|470

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L28