3D structure

PDB id
5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAAU*AAUC*GAA*UGUAG
Length
17 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5LI0_002 not in the Motif Atlas
Homologous match to J4_7A0S_002
Geometric discrepancy: 0.1247
The information below is about J4_7A0S_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_71729.5
Basepair signature
cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW
Number of instances in this motif group
4

Unit IDs

5LI0|1|A|C|340
5LI0|1|A|G|341
5LI0|1|A|A|342
5LI0|1|A|A|343
5LI0|1|A|U|344
*
5LI0|1|A|A|359
5LI0|1|A|A|360
5LI0|1|A|U|361
5LI0|1|A|C|362
*
5LI0|1|A|G|366
5LI0|1|A|A|367
5LI0|1|A|A|368
*
5LI0|1|A|U|380
5LI0|1|A|G|381
5LI0|1|A|U|382
5LI0|1|A|A|383
5LI0|1|A|G|384

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain F
50S ribosomal protein L4
Chain X
50S ribosomal protein L24

Coloring options:


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