J4_5LI0_003
3D structure
- PDB id
- 5LI0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CGUAG*CGAGU*GCGUUUAG
- Length
- 22 nucleotides
- Bulged bases
- 5LI0|1|A|U|698, 5LI0|1|A|U|699
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LI0_003 not in the Motif Atlas
- Homologous match to J4_4WF9_003
- Geometric discrepancy: 0.2133
- The information below is about J4_4WF9_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_60168.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
5LI0|1|A|C|644
5LI0|1|A|A|645
5LI0|1|A|A|646
5LI0|1|A|G|647
*
5LI0|1|A|C|669
5LI0|1|A|G|670
5LI0|1|A|U|671
5LI0|1|A|A|672
5LI0|1|A|G|673
*
5LI0|1|A|C|680
5LI0|1|A|G|681
5LI0|1|A|A|682
5LI0|1|A|G|683
5LI0|1|A|U|684
*
5LI0|1|A|G|694
5LI0|1|A|C|695
5LI0|1|A|G|696
5LI0|1|A|U|697
5LI0|1|A|U|698
5LI0|1|A|U|699
5LI0|1|A|A|700
5LI0|1|A|G|701
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 7
- 50S ribosomal protein L35
- Chain F
- 50S ribosomal protein L4
- Chain O
- 50S ribosomal protein L15
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