J4_5LI0_010

3D structure

PDB id

5LI0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAGC*GAC*GGACG*CCC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LI0_010 not in the Motif Atlas

Homologous match to J4_9DFE_010

Geometric discrepancy: 0.1489

The information below is about J4_9DFE_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5LI0|1|A|G|2670
5LI0|1|A|A|2671
5LI0|1|A|G|2672
5LI0|1|A|C|2673
*
5LI0|1|A|G|2701
5LI0|1|A|A|2702
5LI0|1|A|C|2703
*
5LI0|1|A|G|2758
5LI0|1|A|G|2759
5LI0|1|A|A|2760
5LI0|1|A|C|2761
5LI0|1|A|G|2762
*
5LI0|1|A|C|2796
5LI0|1|A|C|2797
5LI0|1|A|C|2798

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L3

Chain M

50S ribosomal protein L13

Chain N

50S ribosomal protein L14