J4_5LKS_005

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GGG*UUGUGAA*UGGAAAG*UC

Length

19 nucleotides

Bulged bases

5LKS|1|L5|A|2696

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|2618
5LKS|1|L5|G|2619
5LKS|1|L5|G|2620
*
5LKS|1|L5|U|2636
5LKS|1|L5|U|2637
5LKS|1|L5|G|2638
5LKS|1|L5|U|2639
5LKS|1|L5|G|2640
5LKS|1|L5|A|2641
5LKS|1|L5|A|2642
*
5LKS|1|L5|U|2692
5LKS|1|L5|G|2693
5LKS|1|L5|G|2694
5LKS|1|L5|A|2695
5LKS|1|L5|A|2696
5LKS|1|L5|A|2697
5LKS|1|L5|G|2698
*
5LKS|1|L5|U|2718
5LKS|1|L5|C|2719

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LR

60S ribosomal protein L19

Chain LU

60S ribosomal protein L22

Chain Lg

60S ribosomal protein L34

Chain Lk

60S ribosomal protein L38