J4_5LKS_012

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAGUCCACUUUAAAUCCUUCCGCGAGGAUCCAU*AUAG

Length

54 nucleotides

Bulged bases

5LKS|1|S2|U|580, 5LKS|1|S2|G|589, 5LKS|1|S2|A|590, 5LKS|1|S2|U|591, 5LKS|1|S2|C|592, 5LKS|1|S2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|S2|C|30
5LKS|1|S2|U|31
5LKS|1|S2|U|32
5LKS|1|S2|G|33
5LKS|1|S2|U|34
*
5LKS|1|S2|A|521
5LKS|1|S2|A|522
5LKS|1|S2|A|523
5LKS|1|S2|U|524
5LKS|1|S2|A|525
5LKS|1|S2|A|526
5LKS|1|S2|C|527
*
5LKS|1|S2|G|558
5LKS|1|S2|G|559
5LKS|1|S2|A|560
5LKS|1|S2|A|561
5LKS|1|S2|U|562
5LKS|1|S2|G|563
5LKS|1|S2|A|564
5LKS|1|S2|G|565
5LKS|1|S2|U|566
5LKS|1|S2|C|567
5LKS|1|S2|C|568
5LKS|1|S2|A|569
5LKS|1|S2|C|570
5LKS|1|S2|U|571
5LKS|1|S2|U|572
5LKS|1|S2|U|573
5LKS|1|S2|A|574
5LKS|1|S2|A|575
5LKS|1|S2|A|576
5LKS|1|S2|U|577
5LKS|1|S2|C|578
5LKS|1|S2|C|579
5LKS|1|S2|U|580
5LKS|1|S2|U|581
5LKS|1|S2|C|582
5LKS|1|S2|C|583
5LKS|1|S2|G|584
5LKS|1|S2|C|585
5LKS|1|S2|G|586
5LKS|1|S2|A|587
5LKS|1|S2|G|588
5LKS|1|S2|G|589
5LKS|1|S2|A|590
5LKS|1|S2|U|591
5LKS|1|S2|C|592
5LKS|1|S2|C|593
5LKS|1|S2|A|594
5LKS|1|S2|U|595
*
5LKS|1|S2|A|641
5LKS|1|S2|U|642
5LKS|1|S2|A|643
5LKS|1|S2|G|644

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

40S ribosomal protein S9

Chain SX

40S ribosomal protein S23

Chain SY

40S ribosomal protein S24

Chain Se

Ribosomal protein S30