J4_5LKS_013
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAUGCAUGU*GCGAAUGGC*GAGG*CCACAUCCAAGGAAGGCAGCAG
- Length
- 44 nucleotides
- Bulged bases
- 5LKS|1|S2|A|92, 5LKS|1|S2|A|464
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|S2|C|49
5LKS|1|S2|A|50
5LKS|1|S2|U|51
5LKS|1|S2|G|52
5LKS|1|S2|C|53
5LKS|1|S2|A|54
5LKS|1|S2|U|55
5LKS|1|S2|G|56
5LKS|1|S2|U|57
*
5LKS|1|S2|G|88
5LKS|1|S2|C|89
5LKS|1|S2|G|90
5LKS|1|S2|A|91
5LKS|1|S2|A|92
5LKS|1|S2|U|93
5LKS|1|S2|G|94
5LKS|1|S2|G|95
5LKS|1|S2|C|96
*
5LKS|1|S2|G|434
5LKS|1|S2|A|435
5LKS|1|S2|G|436
5LKS|1|S2|G|437
*
5LKS|1|S2|C|456
5LKS|1|S2|C|457
5LKS|1|S2|A|458
5LKS|1|S2|C|459
5LKS|1|S2|A|460
5LKS|1|S2|U|461
5LKS|1|S2|C|462
5LKS|1|S2|C|463
5LKS|1|S2|A|464
5LKS|1|S2|A|465
5LKS|1|S2|G|466
5LKS|1|S2|G|467
5LKS|1|S2|A|468
5LKS|1|S2|A|469
5LKS|1|S2|G|470
5LKS|1|S2|G|471
5LKS|1|S2|C|472
5LKS|1|S2|A|473
5LKS|1|S2|G|474
5LKS|1|S2|C|475
5LKS|1|S2|A|476
5LKS|1|S2|G|477
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LV
- 60S ribosomal protein L23
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SJ
- 40S ribosomal protein S9
- Chain SY
- 40S ribosomal protein S24
Coloring options: