J4_5LKS_015
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- UGGUUCCUUUGGUCGCUCGCUCCUCUCCCACUU*AUGCCGACGGGCGCUGACCCCCUUCGCGGGGGGGAUGCGUGCAUU*ACCUCGGGCCGAUCG*CGACGACCCAUUCGAA
- Length
- 109 nucleotides
- Bulged bases
- 5LKS|1|S2|G|113, 5LKS|1|S2|G|114, 5LKS|1|S2|U|128, 5LKS|1|S2|C|129, 5LKS|1|S2|G|130, 5LKS|1|S2|C|131, 5LKS|1|S2|U|132, 5LKS|1|S2|C|133, 5LKS|1|S2|C|134, 5LKS|1|S2|U|135, 5LKS|1|S2|C|136, 5LKS|1|S2|U|137, 5LKS|1|S2|C|138, 5LKS|1|S2|C|139, 5LKS|1|S2|C|140, 5LKS|1|S2|C|142, 5LKS|1|S2|C|179, 5LKS|1|S2|G|183, 5LKS|1|S2|C|199, 5LKS|1|S2|U|305, 5LKS|1|S2|C|306, 5LKS|1|S2|G|307, 5LKS|1|S2|G|308
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|S2|U|112
5LKS|1|S2|G|113
5LKS|1|S2|G|114
5LKS|1|S2|U|115
5LKS|1|S2|U|116
5LKS|1|S2|C|117
5LKS|1|S2|C|118
5LKS|1|S2|U|119
5LKS|1|S2|U|120
5LKS|1|S2|U|121
5LKS|1|S2|G|122
5LKS|1|S2|G|123
5LKS|1|S2|U|124
5LKS|1|S2|C|125
5LKS|1|S2|G|126
5LKS|1|S2|C|127
5LKS|1|S2|U|128
5LKS|1|S2|C|129
5LKS|1|S2|G|130
5LKS|1|S2|C|131
5LKS|1|S2|U|132
5LKS|1|S2|C|133
5LKS|1|S2|C|134
5LKS|1|S2|U|135
5LKS|1|S2|C|136
5LKS|1|S2|U|137
5LKS|1|S2|C|138
5LKS|1|S2|C|139
5LKS|1|S2|C|140
5LKS|1|S2|A|141
5LKS|1|S2|C|142
5LKS|1|S2|U|143
5LKS|1|S2|U|144
*
5LKS|1|S2|A|175
5LKS|1|S2|U|176
5LKS|1|S2|G|177
5LKS|1|S2|C|178
5LKS|1|S2|C|179
5LKS|1|S2|G|180
5LKS|1|S2|A|181
5LKS|1|S2|C|182
5LKS|1|S2|G|183
5LKS|1|S2|G|184
5LKS|1|S2|G|185
5LKS|1|S2|C|186
5LKS|1|S2|G|187
5LKS|1|S2|C|188
5LKS|1|S2|U|189
5LKS|1|S2|G|190
5LKS|1|S2|A|191
5LKS|1|S2|C|192
5LKS|1|S2|C|193
5LKS|1|S2|C|194
5LKS|1|S2|C|195
5LKS|1|S2|C|196
5LKS|1|S2|U|197
5LKS|1|S2|U|198
5LKS|1|S2|C|199
5LKS|1|S2|G|200
5LKS|1|S2|C|201
5LKS|1|S2|G|202
5LKS|1|S2|G|203
5LKS|1|S2|G|204
5LKS|1|S2|G|205
5LKS|1|S2|G|206
5LKS|1|S2|G|207
5LKS|1|S2|G|208
5LKS|1|S2|A|209
5LKS|1|S2|U|210
5LKS|1|S2|G|211
5LKS|1|S2|C|212
5LKS|1|S2|G|213
5LKS|1|S2|U|214
5LKS|1|S2|G|215
5LKS|1|S2|C|216
5LKS|1|S2|A|217
5LKS|1|S2|U|218
5LKS|1|S2|U|219
*
5LKS|1|S2|A|302
5LKS|1|S2|C|303
5LKS|1|S2|C|304
5LKS|1|S2|U|305
5LKS|1|S2|C|306
5LKS|1|S2|G|307
5LKS|1|S2|G|308
5LKS|1|S2|G|309
5LKS|1|S2|C|310
5LKS|1|S2|C|311
5LKS|1|S2|G|312
5LKS|1|S2|A|313
5LKS|1|S2|U|314
5LKS|1|S2|C|315
5LKS|1|S2|G|316
*
5LKS|1|S2|C|334
5LKS|1|S2|G|335
5LKS|1|S2|A|336
5LKS|1|S2|C|337
5LKS|1|S2|G|338
5LKS|1|S2|A|339
5LKS|1|S2|C|340
5LKS|1|S2|C|341
5LKS|1|S2|C|342
5LKS|1|S2|A|343
5LKS|1|S2|U|344
5LKS|1|S2|U|345
5LKS|1|S2|C|346
5LKS|1|S2|G|347
5LKS|1|S2|A|348
5LKS|1|S2|A|349
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain LW
- 60S ribosomal protein L24
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SG
- 40S ribosomal protein S6
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- 40S ribosomal protein S11
Coloring options: