3D structure

PDB id
5LKS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure-function insights reveal the human ribosome as a cancer target for antibiotics
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
GUUAAAAAGCUC*GAACGAAAG*CCAUAAACGAUG*UUC
Length
36 nucleotides
Bulged bases
5LKS|1|S2|A|668, 5LKS|1|S2|A|672, 5LKS|1|S2|A|1083, 5LKS|1|S2|C|1085, 5LKS|1|S2|G|1086, 5LKS|1|S2|A|1087
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

5LKS|1|S2|G|665
5LKS|1|S2|U|666
5LKS|1|S2|U|667
5LKS|1|S2|A|668
5LKS|1|S2|A|669
5LKS|1|S2|A|670
5LKS|1|S2|A|671
5LKS|1|S2|A|672
5LKS|1|S2|G|673
5LKS|1|S2|C|674
5LKS|1|S2|U|675
5LKS|1|S2|C|676
*
5LKS|1|S2|G|1029
5LKS|1|S2|A|1030
5LKS|1|S2|A|1031
5LKS|1|S2|C|1032
5LKS|1|S2|G|1033
5LKS|1|S2|A|1034
5LKS|1|S2|A|1035
5LKS|1|S2|A|1036
5LKS|1|S2|G|1037
*
5LKS|1|S2|C|1078
5LKS|1|S2|C|1079
5LKS|1|S2|A|1080
5LKS|1|S2|U|1081
5LKS|1|S2|A|1082
5LKS|1|S2|A|1083
5LKS|1|S2|A|1084
5LKS|1|S2|C|1085
5LKS|1|S2|G|1086
5LKS|1|S2|A|1087
5LKS|1|S2|U|1088
5LKS|1|S2|G|1089
*
5LKS|1|S2|U|1160
5LKS|1|S2|U|1161
5LKS|1|S2|C|1162

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain L5
Large subunit ribosomal RNA; LSU rRNA
Chain Ln
60S ribosomal protein L41
Chain Lp
60S ribosomal protein L37a
Chain SL
40S ribosomal protein S11
Chain SN
40S ribosomal protein S13
Chain SO
40S ribosomal protein S14
Chain SW
40S ribosomal protein S15a
Chain SX
40S ribosomal protein S23
Chain Sa
40S ribosomal protein S26

Coloring options:

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