J4_5LKS_016
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- GUUAAAAAGCUC*GAACGAAAG*CCAUAAACGAUG*UUC
- Length
- 36 nucleotides
- Bulged bases
- 5LKS|1|S2|A|668, 5LKS|1|S2|A|672, 5LKS|1|S2|A|1083, 5LKS|1|S2|C|1085, 5LKS|1|S2|G|1086, 5LKS|1|S2|A|1087
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|S2|G|665
5LKS|1|S2|U|666
5LKS|1|S2|U|667
5LKS|1|S2|A|668
5LKS|1|S2|A|669
5LKS|1|S2|A|670
5LKS|1|S2|A|671
5LKS|1|S2|A|672
5LKS|1|S2|G|673
5LKS|1|S2|C|674
5LKS|1|S2|U|675
5LKS|1|S2|C|676
*
5LKS|1|S2|G|1029
5LKS|1|S2|A|1030
5LKS|1|S2|A|1031
5LKS|1|S2|C|1032
5LKS|1|S2|G|1033
5LKS|1|S2|A|1034
5LKS|1|S2|A|1035
5LKS|1|S2|A|1036
5LKS|1|S2|G|1037
*
5LKS|1|S2|C|1078
5LKS|1|S2|C|1079
5LKS|1|S2|A|1080
5LKS|1|S2|U|1081
5LKS|1|S2|A|1082
5LKS|1|S2|A|1083
5LKS|1|S2|A|1084
5LKS|1|S2|C|1085
5LKS|1|S2|G|1086
5LKS|1|S2|A|1087
5LKS|1|S2|U|1088
5LKS|1|S2|G|1089
*
5LKS|1|S2|U|1160
5LKS|1|S2|U|1161
5LKS|1|S2|C|1162
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
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