J4_5LKS_019

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CAAGUCCU*AGGCCCAGCCC*GAC*GGUAG

Length

27 nucleotides

Bulged bases

5LKS|1|L5|U|200, 5LKS|1|L5|C|216, 5LKS|1|L5|C|217, 5LKS|1|L5|A|218, 5LKS|1|L5|G|219

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|C|196
5LKS|1|L5|A|197
5LKS|1|L5|A|198
5LKS|1|L5|G|199
5LKS|1|L5|U|200
5LKS|1|L5|C|201
5LKS|1|L5|C|202
5LKS|1|L5|U|203
*
5LKS|1|L5|A|212
5LKS|1|L5|G|213
5LKS|1|L5|G|214
5LKS|1|L5|C|215
5LKS|1|L5|C|216
5LKS|1|L5|C|217
5LKS|1|L5|A|218
5LKS|1|L5|G|219
5LKS|1|L5|C|220
5LKS|1|L5|C|221
5LKS|1|L5|C|222
*
5LKS|1|L5|G|226
5LKS|1|L5|A|227
5LKS|1|L5|C|228
*
5LKS|1|L5|G|240
5LKS|1|L5|G|241
5LKS|1|L5|U|242
5LKS|1|L5|A|243
5LKS|1|L5|G|244

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26

Chain Le

60S ribosomal protein L32