J4_5LKS_025
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- AGUCGGCAAGCCGG*UGGCU*AACUGGUGCGGACCAGG*CACUGU
- Length
- 42 nucleotides
- Bulged bases
- 5LKS|1|L5|G|3615, 5LKS|1|L5|G|3620, 5LKS|1|L5|G|3625, 5LKS|1|L5|G|3839
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|L5|A|2850
5LKS|1|L5|G|2851
5LKS|1|L5|U|2852
5LKS|1|L5|C|2853
5LKS|1|L5|G|2854
5LKS|1|L5|G|2855
5LKS|1|L5|C|2856
5LKS|1|L5|A|2857
5LKS|1|L5|A|2858
5LKS|1|L5|G|2859
5LKS|1|L5|C|2860
5LKS|1|L5|C|2861
5LKS|1|L5|G|2862
5LKS|1|L5|G|2863
*
5LKS|1|L5|U|2887
5LKS|1|L5|G|2888
5LKS|1|L5|G|2889
5LKS|1|L5|C|2890
5LKS|1|L5|U|2891
*
5LKS|1|L5|A|3610
5LKS|1|L5|A|3611
5LKS|1|L5|C|3612
5LKS|1|L5|U|3613
5LKS|1|L5|G|3614
5LKS|1|L5|G|3615
5LKS|1|L5|U|3616
5LKS|1|L5|G|3617
5LKS|1|L5|C|3618
5LKS|1|L5|G|3619
5LKS|1|L5|G|3620
5LKS|1|L5|A|3621
5LKS|1|L5|C|3622
5LKS|1|L5|C|3623
5LKS|1|L5|A|3624
5LKS|1|L5|G|3625
5LKS|1|L5|G|3626
*
5LKS|1|L5|C|3835
5LKS|1|L5|A|3836
5LKS|1|L5|C|3837
5LKS|1|L5|U|3838
5LKS|1|L5|G|3839
5LKS|1|L5|U|3840
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LB
- 60S ribosomal protein L3
- Chain LR
- 60S ribosomal protein L19
- Chain LV
- 60S ribosomal protein L23
- Chain LW
- 60S ribosomal protein L24
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SI
- 40S ribosomal protein S8
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