J4_5LKS_026

3D structure

PDB id

5LKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure-function insights reveal the human ribosome as a cancer target for antibiotics

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GACUG*CAAAGCA*UGUGAUU*AUGAAC

Length

25 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LKS|1|L5|G|3634
5LKS|1|L5|A|3635
5LKS|1|L5|C|3636
5LKS|1|L5|U|3637
5LKS|1|L5|G|3638
*
5LKS|1|L5|C|3650
5LKS|1|L5|A|3651
5LKS|1|L5|A|3652
5LKS|1|L5|A|3653
5LKS|1|L5|G|3654
5LKS|1|L5|C|3655
5LKS|1|L5|A|3656
*
5LKS|1|L5|U|3688
5LKS|1|L5|G|3689
5LKS|1|L5|U|3690
5LKS|1|L5|G|3691
5LKS|1|L5|A|3692
5LKS|1|L5|U|3693
5LKS|1|L5|U|3694
*
5LKS|1|L5|A|3821
5LKS|1|L5|U|3822
5LKS|1|L5|G|3823
5LKS|1|L5|A|3824
5LKS|1|L5|A|3825
5LKS|1|L5|C|3826

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain Lp

60S ribosomal protein L37a

Chain S2

Small subunit ribosomal RNA; SSU rRNA