J4_5LKS_030
3D structure
- PDB id
- 5LKS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure-function insights reveal the human ribosome as a cancer target for antibiotics
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CUCAUUAAAUC*GCCCUAUCAACU*GGUGACCACGGGUGAC*GGAG
- Length
- 43 nucleotides
- Bulged bases
- 5LKS|1|S2|U|361, 5LKS|1|S2|C|399, 5LKS|1|S2|G|407
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5LKS|1|S2|C|96
5LKS|1|S2|U|97
5LKS|1|S2|C|98
5LKS|1|S2|A|99
5LKS|1|S2|U|100
5LKS|1|S2|U|101
5LKS|1|S2|A|102
5LKS|1|S2|A|103
5LKS|1|S2|A|104
5LKS|1|S2|U|105
5LKS|1|S2|C|106
*
5LKS|1|S2|G|355
5LKS|1|S2|C|356
5LKS|1|S2|C|357
5LKS|1|S2|C|358
5LKS|1|S2|U|359
5LKS|1|S2|A|360
5LKS|1|S2|U|361
5LKS|1|S2|C|362
5LKS|1|S2|A|363
5LKS|1|S2|A|364
5LKS|1|S2|C|365
5LKS|1|S2|U|366
*
5LKS|1|S2|G|394
5LKS|1|S2|G|395
5LKS|1|S2|U|396
5LKS|1|S2|G|397
5LKS|1|S2|A|398
5LKS|1|S2|C|399
5LKS|1|S2|C|400
5LKS|1|S2|A|401
5LKS|1|S2|C|402
5LKS|1|S2|G|403
5LKS|1|S2|G|404
5LKS|1|S2|G|405
5LKS|1|S2|U|406
5LKS|1|S2|G|407
5LKS|1|S2|A|408
5LKS|1|S2|C|409
*
5LKS|1|S2|G|431
5LKS|1|S2|G|432
5LKS|1|S2|A|433
5LKS|1|S2|G|434
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LR
- 60S ribosomal protein L19
- Chain SE
- 40S ribosomal protein S4, X isoform
- Chain SI
- 40S ribosomal protein S8
- Chain SJ
- 40S ribosomal protein S9
- Chain SL
- 40S ribosomal protein S11
- Chain SX
- 40S ribosomal protein S23
Coloring options: