J4_5LMS_003
3D structure
- PDB id
- 5LMS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of bacterial 30S-IF1-IF3-mRNA-tRNA translation pre-initiation complex(state-2C)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.1 Å
Loop
- Sequence
- GGG*CGAAAG*CCCUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 5LMS|1|A|G|576, 5LMS|1|A|A|815, 5LMS|1|A|C|817, 5LMS|1|A|A|819
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_5LMS_003 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.1069
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
5LMS|1|A|G|575
5LMS|1|A|G|576
5LMS|1|A|G|577
*
5LMS|1|A|C|764
5LMS|1|A|G|765
5LMS|1|A|A|766
5LMS|1|A|A|767
5LMS|1|A|A|768
5LMS|1|A|G|769
*
5LMS|1|A|C|810
5LMS|1|A|C|811
5LMS|1|A|C|812
5LMS|1|A|U|813
5LMS|1|A|A|814
5LMS|1|A|A|815
5LMS|1|A|A|816
5LMS|1|A|C|817
5LMS|1|A|G|818
5LMS|1|A|A|819
5LMS|1|A|U|820
5LMS|1|A|G|821
*
5LMS|1|A|C|879
5LMS|1|A|C|880
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- 30S ribosomal protein S8
- Chain L
- 30S ribosomal protein S12
- Chain O
- 30S ribosomal protein S15
- Chain Q
- 30S ribosomal protein S17
Coloring options: