J4_5LMV_001

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GAGUAACGC*GUC*GUAG*CC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5LMV|1|A|G|115
5LMV|1|A|A|116
5LMV|1|A|G|117
5LMV|1|A|U|118
5LMV|1|A|A|119
5LMV|1|A|A|120
5LMV|1|A|C|121
5LMV|1|A|G|122
5LMV|1|A|C|123
*
5LMV|1|A|G|238
5LMV|1|A|U|239
5LMV|1|A|C|240
*
5LMV|1|A|G|286
5LMV|1|A|U|287
5LMV|1|A|A|288
5LMV|1|A|G|289
*
5LMV|1|A|C|311
5LMV|1|A|C|312

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17