J4_5LMV_004

3D structure

PDB id

5LMV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of bacterial 30S-IF1-IF2-IF3-mRNA-tRNA translation pre-initiation complex(state-III)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

G(4SU)GG*CGU*AAG(G7M)UCG*CC

Length

16 nucleotides

Bulged bases

5LMV|1|Z|4SU|8, 5LMV|1|Z|U|47, 5LMV|1|Z|C|48

QA status

Modified nucleotides: 4SU, G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LMV_004 not in the Motif Atlas

Homologous match to J4_5E81_027

Geometric discrepancy: 0.1981

The information below is about J4_5E81_027

Detailed Annotation

tRNA junction

Broad Annotation

No text annotation

Motif group

J4_70449.28

Basepair signature

cWW-F-cWW-cWW-cHS-F-cWW-cWW

Number of instances in this motif group

55

Unit IDs

5LMV|1|Z|G|7
5LMV|1|Z|4SU|8
5LMV|1|Z|G|9
5LMV|1|Z|G|10
*
5LMV|1|Z|C|25
5LMV|1|Z|G|26
5LMV|1|Z|U|27
*
5LMV|1|Z|A|43
5LMV|1|Z|A|44
5LMV|1|Z|G|45
5LMV|1|Z|G7M|46
5LMV|1|Z|U|47
5LMV|1|Z|C|48
5LMV|1|Z|G|49
*
5LMV|1|Z|C|65
5LMV|1|Z|C|66

Current chains

Chain Z

tRNAi

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain M

30S ribosomal protein S13