J4_5LZA_011

3D structure

PDB id

5LZA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 70S ribosome with SECIS-mRNA and P-site tRNA (Initial complex, IC)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZA_011 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.295

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

5LZA|1|a|G|115
5LZA|1|a|A|116
5LZA|1|a|G|117
5LZA|1|a|U|118
5LZA|1|a|A|119
5LZA|1|a|A|120
5LZA|1|a|U|121
5LZA|1|a|G|122
*
5LZA|1|a|U|239
5LZA|1|a|G|240
*
5LZA|1|a|C|286
5LZA|1|a|U|287
5LZA|1|a|A|288
5LZA|1|a|G|289
*
5LZA|1|a|C|311
5LZA|1|a|C|312

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17