3D structure

PDB id
5LZB (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the initial binding state (IB)
Experimental method
ELECTRON MICROSCOPY
Resolution
5.3 Å

Loop

Sequence
GGUUC*GGUGAG*CU*AAUCGUAC
Length
21 nucleotides
Bulged bases
5LZB|1|A|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5LZB_004 not in the Motif Atlas
Homologous match to J4_5J7L_022
Geometric discrepancy: 0.1106
The information below is about J4_5J7L_022
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_69051.6
Basepair signature
cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

5LZB|1|A|G|1310
5LZB|1|A|G|1311
5LZB|1|A|U|1312
5LZB|1|A|U|1313
5LZB|1|A|C|1314
*
5LZB|1|A|G|1338
5LZB|1|A|G|1339
5LZB|1|A|U|1340
5LZB|1|A|G|1341
5LZB|1|A|A|1342
5LZB|1|A|G|1343
*
5LZB|1|A|C|1404
5LZB|1|A|U|1405
*
5LZB|1|A|A|1597
5LZB|1|A|A|1598
5LZB|1|A|U|1599
5LZB|1|A|C|1600
5LZB|1|A|G|1601
5LZB|1|A|U|1602
5LZB|1|A|A|1603
5LZB|1|A|C|1604

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain T
50S ribosomal protein L23

Coloring options:


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