J4_5LZC_001

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5LZC|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZC_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1657

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5LZC|1|A|C|268
5LZC|1|A|C|269
*
5LZC|1|A|G|370
5LZC|1|A|A|371
5LZC|1|A|G|372
5LZC|1|A|U|373
5LZC|1|A|A|374
5LZC|1|A|G|375
*
5LZC|1|A|U|399
5LZC|1|A|G|400
5LZC|1|A|A|401
5LZC|1|A|A|402
5LZC|1|A|U|403
5LZC|1|A|A|404
5LZC|1|A|U|405
5LZC|1|A|G|406
*
5LZC|1|A|C|421
5LZC|1|A|A|422
5LZC|1|A|A|423
5LZC|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28