3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
5LZC|1|A|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5LZC_001 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.1657
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

5LZC|1|A|C|268
5LZC|1|A|C|269
*
5LZC|1|A|G|370
5LZC|1|A|A|371
5LZC|1|A|G|372
5LZC|1|A|U|373
5LZC|1|A|A|374
5LZC|1|A|G|375
*
5LZC|1|A|U|399
5LZC|1|A|G|400
5LZC|1|A|A|401
5LZC|1|A|A|402
5LZC|1|A|U|403
5LZC|1|A|A|404
5LZC|1|A|U|405
5LZC|1|A|G|406
*
5LZC|1|A|C|421
5LZC|1|A|A|422
5LZC|1|A|A|423
5LZC|1|A|G|424

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain H
50S ribosomal protein L9
Chain X
50S ribosomal protein L28

Coloring options:


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