3D structure

PDB id
5LZC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.8 Å

Loop

Sequence
UC*GGUGAG*CU*AAUCGUA
Length
17 nucleotides
Bulged bases
5LZC|1|A|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_5LZC_005 not in the Motif Atlas
Homologous match to J4_5J7L_023
Geometric discrepancy: 0.1204
The information below is about J4_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_10313.5
Basepair signature
cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

5LZC|1|A|U|1313
5LZC|1|A|C|1314
*
5LZC|1|A|G|1338
5LZC|1|A|G|1339
5LZC|1|A|U|1340
5LZC|1|A|G|1341
5LZC|1|A|A|1342
5LZC|1|A|G|1343
*
5LZC|1|A|C|1404
5LZC|1|A|U|1405
*
5LZC|1|A|A|1597
5LZC|1|A|A|1598
5LZC|1|A|U|1599
5LZC|1|A|C|1600
5LZC|1|A|G|1601
5LZC|1|A|U|1602
5LZC|1|A|A|1603

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain T
50S ribosomal protein L23

Coloring options:


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