J4_5LZC_010

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZC_010 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.0983

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

5LZC|1|A|G|2643
5LZC|1|A|G|2644
5LZC|1|A|G|2645
5LZC|1|A|C|2646
*
5LZC|1|A|G|2674
5LZC|1|A|A|2675
5LZC|1|A|C|2676
*
5LZC|1|A|G|2731
5LZC|1|A|G|2732
5LZC|1|A|A|2733
5LZC|1|A|A|2734
5LZC|1|A|G|2735
*
5LZC|1|A|U|2769
5LZC|1|A|G|2770
5LZC|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13

Chain K

50S ribosomal protein L14