J4_5LZC_012

3D structure

PDB id

5LZC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the codon reading state (CR)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

5LZC|1|a|C|183, 5LZC|1|a|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZC_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1281

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5LZC|1|a|G|142
5LZC|1|a|A|143
5LZC|1|a|G|144
*
5LZC|1|a|C|178
5LZC|1|a|A|179
5LZC|1|a|U|180
5LZC|1|a|A|181
5LZC|1|a|A|182
5LZC|1|a|C|183
5LZC|1|a|G|184
*
5LZC|1|a|C|193
5LZC|1|a|C|194
5LZC|1|a|A|195
5LZC|1|a|A|196
5LZC|1|a|A|197
5LZC|1|a|G|198
*
5LZC|1|a|U|219
5LZC|1|a|G|220
5LZC|1|a|C|221

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain t

30S ribosomal protein S20