J4_5LZD_001

3D structure

PDB id

5LZD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of SelB-Sec-tRNASec bound to the 70S ribosome in the GTPase activated state (GA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

5LZD|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_5LZD_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1146

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

5LZD|1|A|C|268
5LZD|1|A|C|269
*
5LZD|1|A|G|370
5LZD|1|A|A|371
5LZD|1|A|G|372
5LZD|1|A|U|373
5LZD|1|A|A|374
5LZD|1|A|G|375
*
5LZD|1|A|U|399
5LZD|1|A|G|400
5LZD|1|A|A|401
5LZD|1|A|A|402
5LZD|1|A|U|403
5LZD|1|A|A|404
5LZD|1|A|U|405
5LZD|1|A|G|406
*
5LZD|1|A|C|421
5LZD|1|A|A|422
5LZD|1|A|A|423
5LZD|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28